Is there a way to use the system properties or environment variables into the build configuration?
It is possible to trigger a custom build from a script using HTTP with commands like this:
//TCServer/httpAuth/action.html?add2Queue=bt10&system.name=<property name>&system.value=<value>&env.name=<environment variable name>&env.value=<environment variable value>
in which we can specify environment variables and system properties.
Is there a way to use these into the Build Configurations? Can I use one to specify the artifact paths, or command line parameters (for a command Line build) for instance? 
Is there a way to use these params to customize the build configs at this stage?
Thanks
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Pascal,
Yes, you can use properties in build runner settings and artifact specification. Please refer to the following section in our doc for using properties: http://confluence.jetbrains.net/display/TCD5/Using+Properties#UsingProperties-UsingPropertiesinBuildConfigurationSettings.
Please note that you will need to definy properties before use them (see more at http://confluence.jetbrains.net/display/TCD5/Defining+Properties).