Team City 5 Agent maxing CPU for long periods of time

I have Team City 5 (build 10715) running with rake and MSBuild.

If I run the rake commands manually, it builds in about 1 minute.
If I let Team City run it, it correctly gets the code from our git server, but then running the build takes an extreme amount of time (30+ min) and the java.exe (i assume the agent) has the CPU maxed out. I can watch the full log and it will slowly output the MSBuild log.

It is installed on Server 2003, 2.2 Ghz CPU, 1Gb Ram.

Any ideas on what this could be, where I could look, anything to make this faster, because right now this is completely unacceptable.

Thanks,
Joe

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Kind regards,
Marina

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